Stem-loop sequence mdo-mir-1544e-1

AccessionMI0023923 (change log)
DescriptionMonodelphis domestica miR-1544e-1 stem-loop
Gene family MIPF0001645; mir-1544
Stem-loop
   --gcgc         u  u  c   aaac 
5'       ccagggaua aa ag ggu    u
         ||||||||| || || |||    u
3'       ggucccuau uu uc cca    c
   ggucau         c  u  a   gaaa 
Get sequence
Deep sequencing
12001 reads, 120 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MonDom5; GCF_000002295.2) Overlapping transcripts
chrX: 13939064-13939122 [-]
intergenic
Clustered miRNAs
< 10kb from mdo-mir-1544e-1
mdo-mir-1545d-3chrX: 13948206-13948263 [-]
mdo-mir-1545fchrX: 13941604-13941663 [-]
mdo-mir-1544e-1chrX: 13939064-13939122 [-]
mdo-mir-1545e-2chrX: 13935990-13936048 [-]
mdo-mir-1544c-1chrX: 13933823-13933883 [-]
mdo-mir-1545e-1chrX: 13930496-13930554 [-]
Database links

Mature sequence mdo-miR-1544e-5p

Accession MIMAT0031033
Sequence

1 - 

gcgcccagggauauaauagcgg

 - 22

Get sequence
Deep sequencing24401 reads, 5 experiments
Evidence experimental; Illumina [1]
Predicted targets

Mature sequence mdo-miR-1544e-3p

Accession MIMAT0031034
Sequence

38 - 

acuuuucuaucccugguacugg

 - 59

Get sequence
Deep sequencing11520 reads, 5 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).