Stem-loop sequence mdo-mir-7305

Accession

MI0023825 (change log)

Description

Monodelphis domestica miR-7305 stem-loop

Stem-loop

   --uc       cu    a  c     caua 
5'     auccaaa  gggc ca ugucc    u
       |||||||  |||| || |||||     
3'     uagguuu  ccug gu auagg    a
   guua       cu    c  -     accg 

Deep sequencing

7991 reads, 40 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr4: 400892027-400892085 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mdo-mir-7305

• mdo-mir-7305: chr4: 400892027-400892085 [-]
• mdo-mir-7304: chr4: 400891596-400891650 [-]
• mdo-mir-1541: chr4: 400891414-400891481 [-]
• mdo-mir-7303: chr4: 400890972-400891034 [-]
• mdo-mir-1643b: chr4: 400890701-400890759 [-]
• mdo-mir-7302: chr4: 400890546-400890607 [-]
• mdo-mir-1643a: chr4: 400890413-400890471 [-]

Database links

• miRBase Tracker:MI0023825

Mature sequence mdo-miR-7305-5p

• Accession: MIMAT0028604
• Sequence: 1 - ucauccaaacugggcacacuguc - 23
• Deep sequencing: 4655 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mdo-miR-7305-5p

Mature sequence mdo-miR-7305-3p

• Accession: MIMAT0028605
• Sequence: 38 - uaugcguccucuuuggauauug - 59
• Deep sequencing: 3336 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mdo-miR-7305-3p

References

1. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).