Stem-loop sequence mdo-mir-1643b

AccessionMI0023822 (change log)
DescriptionMonodelphis domestica miR-1643b stem-loop
Stem-loop
   --a         ag            gc a 
5'    uccuuacua  ggcacuuuuucu  c a
      |||||||||  ||||||||||||  |  
3'    aggggugau  ucgugaaaaagg  g c
   uga         cg            -a u 
Get sequence
Deep sequencing
533 reads, 0 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MonDom5; GCF_000002295.2) Overlapping transcripts
chr4: 400890701-400890759 [-]
intergenic
Clustered miRNAs
< 10kb from mdo-mir-1643b
mdo-mir-7305chr4: 400892027-400892085 [-]
mdo-mir-7304chr4: 400891596-400891650 [-]
mdo-mir-1541chr4: 400891414-400891481 [-]
mdo-mir-7303chr4: 400890972-400891034 [-]
mdo-mir-1643bchr4: 400890701-400890759 [-]
mdo-mir-7302chr4: 400890546-400890607 [-]
mdo-mir-1643achr4: 400890413-400890471 [-]
Database links

Mature sequence mdo-miR-1643b-5p

Accession MIMAT0028598
Sequence

1 - 

auccuuacuaagggcacuuuuuc

 - 23

Get sequence
Deep sequencing34 reads, 3 experiments
Evidence experimental; Illumina [1]
Predicted targets

Mature sequence mdo-miR-1643b-3p

Accession MIMAT0028599
Sequence

37 - 

aaaagugcugcuaguggggaagu

 - 59

Get sequence
Deep sequencing499 reads, 5 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).