Stem-loop sequence mdo-mir-1643a

AccessionMI0023820 (change log)
DescriptionMonodelphis domestica miR-1643a stem-loop
Stem-loop
   --          ag   a      gga  u 
5'   auccucacug  ggc cuuuuu   ug u
     ||||||||||  ||| ||||||   ||  
3'   ugggaguggu  ucg gaaaaa   ac g
   gg          cu   g      -ac  g 
Get sequence
Deep sequencing
4137 reads, 40 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MonDom5; GCF_000002295.2) Overlapping transcripts
chr4: 400890413-400890471 [-]
intergenic
Clustered miRNAs
< 10kb from mdo-mir-1643a
mdo-mir-7305chr4: 400892027-400892085 [-]
mdo-mir-7304chr4: 400891596-400891650 [-]
mdo-mir-1541chr4: 400891414-400891481 [-]
mdo-mir-7303chr4: 400890972-400891034 [-]
mdo-mir-1643bchr4: 400890701-400890759 [-]
mdo-mir-7302chr4: 400890546-400890607 [-]
mdo-mir-1643achr4: 400890413-400890471 [-]
Database links

Mature sequence mdo-miR-1643a-5p

Accession MIMAT0028594
Sequence

1 - 

auccucacugagggcacuuuuu

 - 22

Get sequence
Deep sequencing4 reads, 1 experiments
Evidence experimental; Illumina [1]
Predicted targets

Mature sequence mdo-miR-1643a-3p

Accession MIMAT0028595
Sequence

38 - 

aaagggcuucuggugagggugg

 - 59

Get sequence
Deep sequencing4133 reads, 5 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).