Stem-loop sequence osa-MIR818f

Accession

MI0023432 (change log)

Description

Oryza sativa miR818f stem-loop

Gene family

MIPF0000343; MIR806

Literature search

10 open access papers mention osa-MIR818f
(18 sentences)

Stem-loop

       ---  g     cu  c    uu  gguaaagaaa       u         c     -   -        a                -       u   --gaau     --uuuauuuuau     a    cuu    au 
5' gugg   gg caucc  ca uguu  cu          aauauaa ggauuuuga uuuuu cuu gcacuguu gaccacucgucuuauu aaaaaaa uug      uauua            uugug cuua   uauu  c
   ||||   || |||||  || ||||  ||          ||||||| ||||||||| ||||| ||| |||||||| |||||||||||||||| ||||||| |||      |||||            ||||| ||||   ||||   
3' uacc   cc guagg  gu acga  ga          uuauauu ccuaaaacu aaaaa gaa cgugacaa uuggugagcagaauaa uuuuuuu aac      auaau            aacac gaau   auga  c
       gua  g     au  -    gg  -gguagggca       c         a     c   a        a                a       u   agguuu     uuuuuacuuuuc     -    uuc    aa 

Deep sequencing

1357 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr8: 18746588-18746866 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR818f

• osa-MIR818f: Chr8: 18746588-18746866 [-]
• osa-MIR1882d: Chr8: 18739319-18739478 [-]

Database links

• miRBase Tracker:MI0023432

Mature sequence osa-miR818f

• Accession: MIMAT0026335
• Sequence: 254 - gggagcauguaggauggccau - 274
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).