Stem-loop sequence mmu-mir-6969

Accession

MI0022817 (change log)

Symbol

MGI:Mir6969

Description

Mus musculus miR-6969 stem-loop

Stem-loop

   guuccca      ua        a   -ua    
5'        gcagag  gggagcaa aga   acc 
          ||||||  |||||||| |||   || a
3'        cgucuc  cccuuguu ucu   uga 
   -----ga      ua        g   cag    

Deep sequencing

352 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 28558441-28558501 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000059356 ; Clps-002; intron 1

  OTTMUST00000059355 ; Clps-001; intron 2

  ENSMUST00000114785 ; Clps-002; intron 1

  ENSMUST00000025062 ; Clps-001; intron 2

Database links

• MGI:Mir6969
• miRBase Tracker:MI0022817

Mature sequence mmu-miR-6969-5p

• Accession: MIMAT0027840
• Sequence: 6 - cagcagaguagggagcaaaaga - 27
• Deep sequencing: 32 reads, 1 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6969-5p
  • miRDB:mmu-miR-6969-5p

Mature sequence mmu-miR-6969-3p

• Accession: MIMAT0027841
• Sequence: 42 - uguuguucccaucucugcag - 61
• Deep sequencing: 320 reads, 5 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-6969-3p
  • miRDB:mmu-miR-6969-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).