Stem-loop sequence hsa-mir-6825

Accession

MI0022670 (change log)

Symbol

HGNC:MIR6825

Description

Homo sapiens miR-6825 stem-loop

Literature search

3 open access papers mention hsa-mir-6825
(4 sentences)

Stem-loop

   gg  au       u    a      a       a 
5'   gc  ggggagg gugg gucagc uggggcu g
     ||  ||||||| |||| |||||| |||||||  
3'   cg  ccucuuc cgcc cagucg gccccgg g
   ga  --       -    -      c       a 

Deep sequencing

228 reads, 0 reads per million, 40 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 127575266-127575331 [-]
• Overlapping transcripts:

  intergenic

Database links

• HGNC:MIR6825
• miRBase Tracker:MI0022670

Mature sequence hsa-miR-6825-5p

• Accession: MIMAT0027550
• Sequence: 6 - uggggagguguggagucagcau - 27
• Deep sequencing: 220 reads, 39 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6825-5p
  • miRDB:hsa-miR-6825-5p

Mature sequence hsa-miR-6825-3p

• Accession: MIMAT0027551
• Sequence: 44 - gcgcugacccgccuucuccgca - 65
• Deep sequencing: 8 reads, 7 experiments
• Evidence: experimental; meta-analysis [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-6825-3p
  • miRDB:hsa-miR-6825-3p

References

1. PMID:22955976 "Discovery of hundreds of mirtrons in mouse and human small RNA data" Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC Genome Res. 22:1634-1645(2012).