Stem-loop sequence bta-mir-3956

Accession MI0022291
Description Bos taurus miR-3956 stem-loop
Gene family MIPF0001577; mir-3956
Stem-loop 
g  ---    --   u      -u             aagugcuucugucu 
 cc   aggu  acg ggaugc  gaaggucagaggg              g
 ||   ||||  ||| ||||||  |||||||||||||              c
 gg   ucua  ugc ccuacg  cuuccagucuccu              a
a  auc    cu   -      uc             gaccucuuguguac
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Genome context
Coordinates (UMD3.1) Overlapping transcripts
chr21: 67582109-67582206 [+]
sense
Clustered miRNAs
< 10kb from bta-mir-3956
bta-mir-495 chr21: 67573235-67573315 [+]
bta-mir-154c chr21: 67575252-67575326 [+]
bta-mir-376e chr21: 67577941-67578022 [+]
bta-mir-376c chr21: 67578312-67578397 [+]
bta-mir-376d chr21: 67578686-67578767 [+]
bta-mir-654 chr21: 67578839-67578919 [+]
bta-mir-376b chr21: 67579062-67579154 [+]
bta-mir-376a chr21: 67579421-67579519 [+]
bta-mir-1185 chr21: 67581370-67581455 [+]
bta-mir-3956 chr21: 67582109-67582206 [+]
bta-mir-381 chr21: 67583073-67583147 [+]
bta-mir-487b chr21: 67583558-67583641 [+]
bta-mir-539 chr21: 67584372-67584449 [+]
bta-mir-544a chr21: 67586358-67586448 [+]
bta-mir-655 chr21: 67587315-67587411 [+]
bta-mir-411c chr21: 67589478-67589551 [+]
bta-mir-487a chr21: 67589864-67589943 [+]

Mature sequence bta-miR-3956

Accession MIMAT0025544
Sequence

8 -  

acguggaugcugaaggucagagg

 - 30

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).