Stem-loop sequence ssc-mir-196b-2

AccessionMI0022139 (change log)
DescriptionSus scrofa miR-196b-2 stem-loop
Gene family MIPF0000031; mir-196
Literature search

13 open access papers mention ssc-mir-196b-2
(32 sentences)

Stem-loop
   --guc      uu       u  c           ucca 
5'      ggugau  agguagu uc uguuguuggga    c
        ||||||  ||||||| || |||||||||||     
3'      ucauua  uccguca ag acgacagcucu    c
   ugacu      cu       c  c           cuuu 
Get sequence
Deep sequencing
19 reads, 0 reads per million, 8 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Sscrofa10.2; GCA_000003025.4) Overlapping transcripts
chr18: 50037507-50037584 [+]
sense
ENSSSCT00000020234 ; ssc-mir-196b-2.1-201; exon 1
Database links

Mature sequence ssc-miR-196b-5p

Accession MIMAT0013923
Previous IDsssc-miR-196b
Sequence

11 - 

uagguaguuuccuguuguuggg

 - 32

Get sequence
Deep sequencing38 reads, 8 experiments
Evidence experimental; Illumina [1]

Mature sequence ssc-miR-196b-3p

Accession MIMAT0017379
Sequence

47 - 

cgacagcacgacacugccuuca

 - 68

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:21312241 "MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing" Li G, Li Y, Li X, Ning X, Li M, Yang G J Cell Biochem. 112:1318-1328(2011).
2
PMID:24499489 "Exploration of microRNAs in porcine milk exosomes" Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL BMC Genomics. 15:100(2014).