Stem-loop sequence ggo-mir-889

Accession MI0020662
Description Gorilla gorilla miR-889 stem-loop
Gene family MIPF0000514; mir-889
Stem-loop 
uucuugau    caguuc     -    u   g     c      uagua     -  uau 
        ggca      uuugg ugcu aaa aaugg uguccg     ugguc uc   a
        ||||      ||||| |||| ||| ||||| ||||||     ||||| ||   u
        ucgu      aaacc auga uuu uuacc acaggc     auuag ag   u
--------    ----uu     u    u   g     a      -uaua     u  uau
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Genome context
Coordinates (GorGor3) Overlapping transcripts
14: 83025734-83025843 [+]
intergenic
Clustered miRNAs
< 10kb from ggo-mir-889
ggo-mir-376c 14: 83017526-83017635 [+]
ggo-mir-654 14: 83018061-83018169 [+]
ggo-mir-376b 14: 83018289-83018398 [+]
ggo-mir-376a 14: 83018617-83018726 [+]
ggo-mir-1185 14: 83022051-83022160 [+]
ggo-mir-381 14: 83023756-83023863 [+]
ggo-mir-487b 14: 83024293-83024402 [+]
ggo-mir-889 14: 83025734-83025843 [+]
ggo-mir-655 14: 83027393-83027500 [+]
ggo-mir-487a 14: 83030285-83030394 [+]
ggo-mir-134 14: 83032548-83032620 [+]
ggo-mir-668 14: 83033090-83033200 [+]
ggo-mir-485 14: 83033268-83033376 [+]
ggo-mir-323b 14: 83034060-83034167 [+]

Mature sequence ggo-miR-889

Accession MIMAT0024115
Sequence

71 -  

uuaauaucggacaaccauug

 - 90

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Evidence experimental; Solexa [1]

References

1
PMID:22453055 "Annotation of primate miRNAs by high throughput sequencing of small RNA libraries" Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J BMC Genomics. 13:116(2012).