Stem-loop sequence cgr-mir-146b

Accession

MI0020408 (change log)

Description

Cricetulus griseus miR-146b stem-loop

Gene family

MIPF0000103; mir-146

Stem-loop

   ---   u   u  g        a    a    cu  ga  u 
5'    acc ggc cu agaacuga uucc uagg  gu  gc c
      ||| ||| || |||||||| |||| ||||  ||  ||  
3'    ugg ccg gg ucuugacu aggg aucc  ua  cg u
   ugu   c   u  -        c    -    cg  aa  a 

Deep sequencing

735739 reads, 9.48e+03 reads per million, 6 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (CriGri_1.0; GCA_000223135.1): JH000895.1: 588891-588969 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020408

Mature sequence cgr-miR-146b-5p

• Accession: MIMAT0023775
• Sequence: 10 - ugagaacugaauuccauaggcug - 32
• Deep sequencing: 714850 reads, 6 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cgr-miR-146b-3p

• Accession: MIMAT0023776
• Sequence: 48 - gcccuagggacucaguucuggu - 69
• Deep sequencing: 2036 reads, 6 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21392545 "Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering" Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J J Biotechnol. 153:62-75(2011).