Stem-loop sequence bna-MIR6036

Accession

MI0020303 (change log)

Description

Brassica napus miR6036 stem-loop

Literature search

2 open access papers mention bna-MIR6036
(2 sentences)

Stem-loop

   ucaguua  --cuca      ucu     -       a      uuauuuuaua     -  g  cg  ug       -agug  gu 
5'        gc      gugguu   cgggu cuaguau uauauu          uggua ac gg  gu  uugugga     au  u
          ||      ||||||   ||||| ||||||| ||||||          ||||| || ||  ||  |||||||     ||  u
3'        cg      uacuag   guuca gaucaug auauaa          aucau ug uu  ua  aacacuu     ua  a
   ------a  uauaug      uac     u       -      ----------     a  g  ag  gu       aagaa  aa 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (BrassicaDB-20080411): EM:AC189214: 37840-37994 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020303

Mature sequence bna-miR6036

• Accession: MIMAT0023656
• Sequence: 122 - auaguacuaguacuugcaugauca - 145
• Evidence: experimental; Illumina [1]

References

1. PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes" Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ Plant Physiol. 158:813-823(2012).