Stem-loop sequence bna-MIR395a

Accession

MI0020283 (change log)

Description

Brassica napus miR395a stem-loop

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention bna-MIR395a
(18 sentences)

Stem-loop

      ua         ug         u      uacaa    u 
5' ucc  gaguuccuc  agcacuuca ugggua     uuuc u
   |||  |||||||||  ||||||||| ||||||     ||||  
3' agg  cucaagggg  uugugaagu acccau     gaag a
      uc         gu         c      ---ua    u 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (BrassicaDB-20080411)	Overlapping transcripts
EM:AC189385: 84299-84381 [-]	intergenic
EM:BH697187: 94-176 [+]	intergenic

Clustered miRNAs

< 10kb from bna-MIR395a

• bna-MIR395d: EM:AC189385: 85486-85602 [+]
• bna-MIR395a: EM:AC189385: 84299-84381 [-]

Database links

• miRBase Tracker:MI0020283

Mature sequence bna-miR395a

• Accession: MIMAT0023636
• Sequence: 58 - cugaaguguuugggggaacuc - 78
• Evidence: experimental; Illumina [1]

References

1. PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes" Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ Plant Physiol. 158:813-823(2012).