Stem-loop sequence bna-MIR172a

Accession

MI0020280 (change log)

Description

Brassica napus miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

13 open access papers mention bna-MIR172a
(48 sentences)

Stem-loop

   uu    a gc      c           a    gaa  uga     cu      u 
5'   uugu g  gcagca caucaagauuc caug   au   aaaau  ccuaau u
     |||| |  |||||| ||||||||||| ||||   ||   |||||  |||||| u
3'   aaca c  cgucgu guaguucuaag guau   ua   uuuug  ggauua u
   -c    a ua      a           a    aug  uag     --      a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (BrassicaDB-20080411): EM:AC189388: 19381-19490 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020280

Mature sequence bna-miR172a

• Accession: MIMAT0023633
• Sequence: 83 - agaaucuugaugaugcugcau - 103
• Evidence: experimental; Illumina [1]

References

1. PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes" Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ Plant Physiol. 158:813-823(2012).