Stem-loop sequence bna-MIR160c

Accession

MI0020266 (change log)

Description

Brassica napus miR160c stem-loop

Gene family

MIPF0000032; MIR160

Literature search

10 open access papers mention bna-MIR160c
(46 sentences)

Stem-loop

   gugugu   cuua         c     c -           a   aua   c   c     
5'       gcu    uggucgugc uggcu c cuguaugccac agu   uac gau ucgu 
         |||    ||||||||| ||||| | ||||||||||| |||   ||| ||| ||| u
3'       cga    accaguacg acuga g gacaugcggug ucg   gug cua agca 
   -cuuuu   ---a         a     u a           a   ---   u   a     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (BrassicaDB-20080411): EM:AC189471: 747-861 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0020266

Mature sequence bna-miR160c

• Accession: MIMAT0023619
• Sequence: 20 - ugccuggcucccuguaugcca - 40
• Evidence: experimental; Illumina [1]

References

1. PMID:22138974 "Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes" Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ Plant Physiol. 158:813-823(2012).