Stem-loop sequence stu-MIR6024

Accession

MI0020241 (change log)

Description

Solanum tuberosum miR6024 stem-loop

Gene family

MIPF0001459; MIR6024

Literature search

4 open access papers mention stu-MIR6024
(44 sentences)

Stem-loop

   --aaauu  uaa       u  ag       a             g    uc  -u  u 
5'        gg   ugggaag gg  aaacaac cuugcuaaaagaa uuca  ag  ga u
          ||   ||||||| ||  ||||||| ||||||||||||| ||||  ||  || c
3'        cc   acucuuc cc  uuuguug gaacgauuuuuuu aggu  uc  cu u
   cucucug  uua       u  cu       a             g    uu  uu  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SolTub3.0; GCA_000226075.1): JH137968.1: 737039-737156 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007B21C0_4113
• miRBase Tracker:MI0020241

Mature sequence stu-miR6024-5p

• Accession: MIMAT0031159
• Sequence: 21 - agaaacaacacuugcuaaaaga - 42
• Evidence: experimental; Illumina [2]

Mature sequence stu-miR6024-3p

• Accession: MIMAT0023593
• Sequence: 77 - uuuuagcaagaguuguuuuccc - 98
• Evidence: experimental; Illumina [2]

References

1. PMID:22307647 "MicroRNA regulation of plant innate immune receptors" Li F, Pignatta D, Bendix C, Brunkard JO, Cohn MM, Tung J, Sun H, Kumar P, Baker B Proc Natl Acad Sci U S A. 109:1790-1795(2012).
2. PMID:23437348 "Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing" Zhang R, Marshall D, Bryan GJ, Hornyik C PLoS One. 8:e57233(2013).