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miRBase |
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Stem-loop sequence osa-MIR5143b |
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Accession | MI0019834 (change log) | |||||
Description | Oryza sativa miR5143b stem-loop | |||||
Gene family | MIPF0001617; MIR5143 | |||||
Literature search |
2 open access papers mention osa-MIR5143b | |||||
Stem-loop |
ugac u - a ca u ug g cgcauguugcccuguuuaccacuauuaaucaagacacucccccuc 5' uca gcuucc auguug ccaacauaccac aaa auua au uu c ||| |||||| |||||| |||||||||||| ||| |||| || || 3' agu ugaagg uguaac gguuguauggug uuu uaau ug aa u ggua c a - uc - gu g ucggacaaaugguuauauaacuacaagugguccuuuuguuuucuc |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence osa-miR5143b |
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Accession | MIMAT0023289 |
Sequence |
158 - ugugguauguuggcaauguaggaa - 181 |
Deep sequencing | 12 reads, 2 experiments |
Evidence | experimental; Illumina [1] |
References |
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1 |
PMID:22158467
"Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"
Plant Cell. 23:4185-4207(2011).
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