Stem-loop sequence osa-MIR812p

Accession

MI0019799 (change log)

Description

Oryza sativa miR812p stem-loop

Gene family

MIPF0000345; MIR812

Literature search

9 open access papers mention osa-MIR812p
(16 sentences)

Stem-loop

                         u   c     a                     c              aaaaaaaugaaaaaguaagucacguauaaaguacuau 
5' ccuauuuuaagugcagccauga uuu cgugc caacuuuaaucguccguuuua uugaauuuuuuuug                                     u
   |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||                                      
3' ggguaaaauucacguugguauu aaa guacg guugaaauuagcaggcagaau aacuuaaaaaaaau                                     c
                         c   a     g                     a              auuaaacguaaaaauaacaauacccuacuauuuuaua 

Deep sequencing

4629 reads, 700 reads per million, 2 experiments

Confidence

Annotation confidence: low

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Genome context

• Coordinates (MSU7): Chr8: 25425998-25426211 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019799

Mature sequence osa-miR812p

• Accession: MIMAT0023254
• Sequence: 164 - gacggacgauuaaaguugggcaug - 187
• Deep sequencing: 3098 reads, 2 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage" Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ Plant Cell. 23:4185-4207(2011).