Stem-loop sequence sha-mir-205

Accession MI0019640
Description Sarcophilus harrisii miR-205 stem-loop
Gene family MIPF0000058; mir-205
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled Mir-205. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology miR-205 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by several mechanisms. They are involved in numerous cellular processes, including development, proliferation, and apoptosis. Currently, it is believed that miRNAs elicit their effect by silencing the expression of target genes. The miR-200 family (miR-200a, miR-200b, miR-200c, miR-141 and miR-429) and miR-205 are frequently silenced in advanced cancer. Studies has shown that by targeting the transcriptional repressors of E-cadherin, ZEB1 and ZEB2, it is involved in epithelial to mesenchymal transition (EMT) and tumor invasion. Recently, miR-200 silencing was also reported in cancer stem cells, implying that miR-200 deregulation is a key event in multiple levels of tumor biology. However, what prevents miR-200 expression remains largely unanswered.

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Stem-loop
-------------------------------------aa   caagauga      aguu       uc           c        ucuca 
                                       gcu        uccaug    ucucuug  cuucauuccac ggagucug     u
                                       |||        ||||||    |||||||  ||||||||||| ||||||||     a
                                       cga        agguac    ggagaau  gaagugaggug cuuuagac     u
gaaaagaacacagucucaauuagaacuucaccgacgaca   cucaguug      ----       uc           a        uaauc 
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Genome context
Coordinates (DEVIL7_0) Overlapping transcripts
GL856783.1: 365799-365948 [+]
intergenic

Mature sequence sha-miR-205

Accession MIMAT0022812
Sequence

31 - 

uccuucauuccaccggagucu

 - 51

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Evidence experimental; Solexa [1]

References

1
PMID:20044575 "The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer" Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT Science. 327:84-87(2010).