Stem-loop sequence sha-mir-5105

Accession MI0019608
Description Sarcophilus harrisii miR-5105 stem-loop
Gene family MIPF0001361; mir-5105
Stem-loop 
agcgccaaaucccugccccgcgguggggcgcaagccaugugguguagggaagac     cc     -g -    c  g     ---g   ca    c 
                                                      ccacu  cuggu  c cacu uc guggg    gcc  aguc u
                                                      |||||  |||||  | |||| || |||||    |||  |||| u
                                                      gguga  gaccg  g gugg ag uaccc    cgg  uuag c
-----------------------------------------ucguacggccccc     -u     ga u    c  g     gaca   ag    u
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Genome context
Coordinates (DEVIL7_0) Overlapping transcripts
GL837971.1: 703-852 [+]
intergenic

Mature sequence sha-miR-5105

Accession MIMAT0022782
Sequence

101 -  

gaggcacagcccauggacg

 - 119

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Evidence experimental; Solexa [1]

References

1
PMID:20044575 "The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer" Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT Science. 327:84-87(2010).