Stem-loop sequence ola-mir-29c

AccessionMI0019546 (change log)
DescriptionOryzias latipes miR-29c stem-loop
Gene family MIPF0000009; mir-29
Literature search

2 open access papers mention ola-mir-29c
(14 sentences)

Stem-loop
   -uacauaug    ucaaag            cuc       ua   c  u 
5'          ccac      auaacugauuuc   ugguguu  gag cu c
            ||||      ||||||||||||   |||||||  ||| || u
3'          ggug      uauuggcuaaag   accacga  uuc ga g
   acgucacaa    ucacag            uuu       uc   c  c 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MEDAKA1) Overlapping transcripts
23: 8740492-8740593 [+]
intergenic
Clustered miRNAs
< 10kb from ola-mir-29c
ola-mir-29b-223: 8740355-8740453 [+]
ola-mir-29c23: 8740492-8740593 [+]
Database links

Mature sequence ola-miR-29c

Accession MIMAT0022656
Sequence

61 - 

uagcaccauuugaaaucg

 - 78

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).