Stem-loop sequence ola-mir-29c

Accession

MI0019546 (change log)

Description

Oryzias latipes miR-29c stem-loop

Gene family

MIPF0000009; mir-29

Literature search

2 open access papers mention ola-mir-29c
(14 sentences)

Stem-loop

   -uacauaug    ucaaag            cuc       ua   c  u 
5'          ccac      auaacugauuuc   ugguguu  gag cu c
            ||||      ||||||||||||   |||||||  ||| || u
3'          ggug      uauuggcuaaag   accacga  uuc ga g
   acgucacaa    ucacag            uuu       uc   c  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MEDAKA1): 23: 8740492-8740593 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ola-mir-29c

• ola-mir-29b-2: 23: 8740355-8740453 [+]
• ola-mir-29c: 23: 8740492-8740593 [+]

Database links

• miRBase Tracker:MI0019546

Mature sequence ola-miR-29c

• Accession: MIMAT0022656
• Sequence: 61 - uagcaccauuugaaaucg - 78
• Evidence: experimental; SOLiD [1]

References

1. PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).