Stem-loop sequence ola-mir-17

AccessionMI0019542 (change log)
DescriptionOryzias latipes miR-17 stem-loop
Gene family MIPF0000001; mir-17
Literature search

4 open access papers mention ola-mir-17
(7 sentences)

Stem-loop
   uu   ---a     ug      -c         a  g     g   u   c 
5'   uca    gucac  uagugu  aaagugcuu ca ugcag uag uuu u
     |||    |||||  ||||||  ||||||||| || ||||| ||| |||  
3'   agu    uagug  gucacg  uuucacgga gu acguc auc aaa a
   --   guaa     uu      ac         a  g     -   u   a 
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (MEDAKA1) Overlapping transcripts
21: 25694055-25694151 [-]
intergenic
Clustered miRNAs
< 10kb from ola-mir-17
ola-mir-1721: 25694055-25694151 [-]
ola-mir-18-221: 25693655-25693746 [-]
ola-mir-19a21: 25693520-25693627 [-]
ola-mir-20a-221: 25693363-25693464 [-]
ola-mir-19b-121: 25693239-25693340 [-]
ola-mir-92a-121: 25693131-25693234 [-]
Database links

Mature sequence ola-miR-17

Accession MIMAT0022654
Sequence

20 - 

caaagugcuuacagugca

 - 37

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).