Stem-loop sequence ola-mir-100-2

Accession MI0019509
Description Oryzias latipes miR-100-2 stem-loop
Gene family MIPF0000025; mir-99
Stem-loop 
aacgg   -ac     -cu c    a   cg     c   a      guga 
     gua   gccag   g caca acc  uagau cga cuugug    c
     |||   |||||   | |||| |||  ||||| ||| ||||||    u
     cau   cgguc   c gugu ugg  aucua gcu gaacgc    g
-ucga   aaa     cuu u    a   au     u   c      gucg
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Genome context
Coordinates (MEDAKA1) Overlapping transcripts
14: 15650826-15650927 [-]
intergenic
Clustered miRNAs
< 10kb from ola-mir-100-2
ola-mir-100-2 14: 15650826-15650927 [-]
ola-let-7a-4 14: 15650352-15650450 [-]
ola-mir-125b-1 14: 15646480-15646580 [-]

Mature sequence ola-miR-100

Accession MIMAT0022614
Sequence

24 -  

aacccguagauccgaacuu

 - 42

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).