Stem-loop sequence ola-mir-199a-3

Accession

MI0019485 (change log)

Description

Oryzias latipes miR-199a-3 stem-loop

Gene family

MIPF0000040; mir-199

Literature search

2 open access papers mention ola-mir-199a-3
(2 sentences)

Stem-loop

   uacccc    cccau  c     c       u        c   u   gaag 
5'       uccc     cc gccug ccagugu cagacuac ugu cag    u
         ||||     || ||||| ||||||| |||||||| ||| |||     
3'       aggg     gg cggau gguuaca gucugaug aca guu    a
   gcguga    --auu  u     u       c        -   u   ggug 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MEDAKA1): 12: 11677445-11677547 [+]
• Overlapping transcripts:

  antisense

  ENSORLT00000008818 ; dnm1a-201; intron 15

Database links

• miRBase Tracker:MI0019485

Mature sequence ola-miR-199a-5p

• Accession: MIMAT0022538
• Sequence: 24 - cccaguguucagacuaccuguu - 45
• Evidence: experimental; SOLiD [1]

Mature sequence ola-miR-199a-3p

• Accession: MIMAT0022539
• Sequence: 63 - acaguagucugcacauugguua - 84
• Evidence: experimental; SOLiD [1]

References

1. PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).