Stem-loop sequence ola-mir-1306

Accession

MI0019471 (change log)

Description

Oryzias latipes miR-1306 stem-loop

Gene family

MIPF0000531; mir-1306

Stem-loop

   cucccauuggagccuccugaugauuucggccuggaacagggcagggcaccuccaccaccuccccugca        gug  gc 
5'                                                                     aacgucca   ac  a
                                                                       ||||||||   ||   
3'                                                                     uugcaggu   ug  g
   ---------------------------------------------------------gguggucucga        -aa  ga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MEDAKA1): 9: 23130448-23130557 [-]
• Overlapping transcripts:

  sense

  ENSORLT00000018998 ; ola-mir-1306-201; exon 1

  ENSORLT00000026400 ; exon 1

Database links

• miRBase Tracker:MI0019471

Mature sequence ola-miR-1306

• Accession: MIMAT0022590
• Sequence: 55 - ccaccuccccugcaaacgucc - 75
• Evidence: experimental; SOLiD [1]

References

1. PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).