Stem-loop sequence ola-mir-124-1

Accession

MI0019450 (change log)

Description

Oryzias latipes miR-124-1 stem-loop

Gene family

MIPF0000021; mir-124

Literature search

3 open access papers mention ola-mir-124-1
(6 sentences)

Stem-loop

   ---cacuucaa     g  a    - c        a   ga        uaaug 
5'            agguu uc cucu g guguucac gcg  ccuugauu     u
              ||||| || |||| | |||||||| |||  ||||||||      
3'            ucuaa gg gaga c cguaagug cgc  ggaauuaa     c
   gugcuacgaca     -  a    a -        g   ac        cauac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MEDAKA1): 7: 16234646-16234749 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019450

Mature sequence ola-miR-124-5p

• Accession: MIMAT0022689
• Sequence: 23 - cguguucacagcggaccuu - 41
• Evidence: experimental; SOLiD [1]

Mature sequence ola-miR-124-3p

• Accession: MIMAT0022573
• Sequence: 61 - uaaggcacgcggugaaugcca - 81
• Evidence: experimental; SOLiD [1]

References

1. PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).