Stem-loop sequence ola-mir-183-1

Accession

MI0019436 (change log)

Description

Oryzias latipes miR-183-1 stem-loop

Gene family

MIPF0000066; mir-183

Literature search

1 open access papers mention ola-mir-183-1
(2 sentences)

Stem-loop

   auccacaa   -c  -         g      --ac     ga        ucacag 
5'         uuc  uc cuauucugu uauggc    uggua  auucacug      c
           |||  || ||||||||| ||||||    |||||  ||||||||       
3'         aag  ag gaugagaca auaccg    accau  uaagugac      a
   -ugacucc   ac  a         a      ggau     --        uaucuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MEDAKA1): 6: 16407646-16407754 [-]
• Overlapping transcripts:

  sense

  ENSORLT00000026106 ; ola-mir-183-1-201; exon 1

Database links

• miRBase Tracker:MI0019436

Mature sequence ola-miR-183-5p

• Accession: MIMAT0022555
• Sequence: 26 - auggcacugguagaauuca - 44
• Evidence: experimental; SOLiD [1]

Mature sequence ola-miR-183-3p

• Accession: MIMAT0022556
• Sequence: 64 - gugaauuaccauagggccaua - 84
• Evidence: experimental; SOLiD [1]

References

1. PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).