Stem-loop sequence bra-MIR5713

Accession

MI0019324 (change log)

Description

Brassica rapa miR5713 stem-loop

Literature search

1 open access papers mention bra-MIR5713
(1 sentences)

Stem-loop

   auaa                c   u                                                                            ugcagaccaguuaugacugugauacccagucacagcggaaggguucuuaaggauucauaacuguuuugucaaggguucagaauguuuuuuuggggaaaugauaggguuuacaauggcaaaauu 
5'     gcagaguuacucuagg aau aucuuccuccgauugaaauuugcagaccaguuggacuaccggagcuagguaggcuuagaagaacguuuguuaaauu                                                                                                                           a
       |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                                                                                            
3'     ugucucaaugagaucc uua uagaaggaggcuaacuuuaaacgucuggucaaccugauggccucgauccauccgaaucuucuugcaaacaauuuaa                                                                                                                           g
   ----                a   c                                                                            cuacccagucagcucagacucgcccgguggcaaugguugacuacguuugucaccuuucucugccaaacaccuaaugaacuugucucucaaaucuccauuauugcgaacuuacguaguagagag 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Brapa_1.1; GCA_000309985.1): chrA9: 34116461-34116906 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019324

Mature sequence bra-miR5713

• Accession: MIMAT0023010
• Sequence: 76 - aggcuuagaagaacguuuguu - 96
• Evidence: experimental; Illumina [1]

References

1. PMID:22025521 "Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa" Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y J Exp Bot. 63:1025-1038(2012).