Stem-loop sequence bra-MIR5654a

AccessionMI0019321 (change log)
DescriptionBrassica rapa miR5654a stem-loop
Gene family MIPF0001454; MIR5654
Literature search

2 open access papers mention bra-MIR5654a
(2 sentences)

Stem-loop
   uaa   -ug     -   cu   cguuucu  uuc  -u          --uc   uauua                          cc    u    c  ga 
5'    uga   uauug uag  cug       ug   gu  cacucuuuug    agg     acaagauaaaucccaagcaucaucca  uuau agcc uu  a
      |||   ||||| |||  |||       ||   ||  ||||||||||    |||     ||||||||||||||||||||||||||  |||| |||| ||   
3'    acu   guaac auc  gau       ac   cg  gugagaaaau    ucc     uguuuuauuuaggguucguaguaggu  aaug ucgg ag  c
   -ag   uua     c   ag   -------  cuc  uu          cuuc   ucuca                          aa    u    a  ua 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Brapa_1.1; GCA_000309985.1) Overlapping transcripts
chrA6: 20504780-20504974 [+]
intergenic
Database links

Mature sequence bra-miR5654a

Accession MIMAT0023007
Sequence

62 - 

auaaaucccaagcaucaucca

 - 82

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:22025521 "Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa" Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y J Exp Bot. 63:1025-1038(2012).