Stem-loop sequence cin-mir-5609

Accession MI0019175
Description Ciona intestinalis miR-5609 stem-loop
Stem-loop 
---   a   g   g   ug      uu 
   agc gua cga ccu  aaccca  a
   ||| ||| ||| |||  ||||||  c
   ucg cgu gcu gga  uugggu  a
caa   -   g   -   ca      cu
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Genome context
Coordinates (JGI2) Overlapping transcripts
10q: 1223268-1223321 [+]
sense
ENSCINT00000011463 ; F6Y3M3_CIOIN; intron 4

Mature sequence cin-miR-5609-5p

Accession MIMAT0022345
Previous IDs cin-miR-5609
Sequence

1 -  

agcaguagcgagccuugaaccc

 - 22

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Evidence not experimental

Mature sequence cin-miR-5609-3p

Accession MIMAT0022346
Previous IDs cin-miR-5609*
Sequence

34 -  

guuacaggucggugcgcuaac

 - 54

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Evidence not experimental

References

1
PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).