Stem-loop sequence cel-mir-5595

Accession

MI0019159 (change log)

Description

Caenorhabditis elegans miR-5595 stem-loop

Stem-loop

   --           u       ca    aaaa  u 
5'   ucucuuuuuuc cgcaugc  ucuc    ca c
     ||||||||||| |||||||  ||||    ||  
3'   agagagaagag gugugcg  agag    gu g
   gc           -       ag    --cg  a 

Deep sequencing

60 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 14399565-14399629 [-]
• Overlapping transcripts:

  antisense

  F26H11.2a ; F26H11.2a; intron 13

  F26H11.2b ; F26H11.2b; intron 13

  F26H11.2c ; F26H11.2c; intron 13

  F26H11.2i ; F26H11.2i; intron 13

  F26H11.2k ; F26H11.2k; intron 13

Database links

• RNAcentral:URS00002DBD77_6239
• miRBase Tracker:MI0019159

Mature sequence cel-miR-5595-5p

• Accession: MIMAT0022313
• Sequence: 1 - ucucuuuuuucucgcaugccaucu - 24
• Deep sequencing: 9 reads, 6 experiments
• Evidence: not experimental

Mature sequence cel-miR-5595-3p

• Accession: MIMAT0022314
• Sequence: 43 - agagcguguggagaagagagacg - 65
• Deep sequencing: 47 reads, 12 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001A7197_6239

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).