Stem-loop sequence cel-mir-356b

Accession

MI0019158 (change log)

Description

Caenorhabditis elegans miR-356b stem-loop

Literature search

2 open access papers mention cel-mir-356b
(3 sentences)

Stem-loop

   --    -   ac   u  u        cg ugaaa 
5'   uggu gag  acg cg aacgaauc  c     u
     |||| |||  ||| || ||||||||  |     u
3'   acca cuc  ugc gc uuguuuag  g     u
   ac    a   gu   -  -        ua uuaca 

Deep sequencing

276 reads, 0 reads per million, 14 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIII: 7860167-7860234 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-356b

• cel-mir-356b: chrIII: 7860167-7860234 [-]
• cel-mir-356a: chrIII: 7860147-7860256 [+]

Database links

• RNAcentral:URS00003FB5DD_6239
• miRBase Tracker:MI0019158

Mature sequence cel-miR-356b-5p

• Accession: MIMAT0022311
• Sequence: 1 - uggugagacacgucguaacgaau - 23
• Deep sequencing: 76 reads, 12 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001FF91D_6239

Mature sequence cel-miR-356b-3p

• Accession: MIMAT0022312
• Sequence: 46 - uuuguucgcguugcucaaccaca - 68
• Deep sequencing: 197 reads, 14 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00003AAE20_6239

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).