Stem-loop sequence cel-mir-5593-1

Accession

MI0019155 (change log)

Description

Caenorhabditis elegans miR-5593-1 stem-loop

Gene family

MIPF0001336; mir-5593

Stem-loop

   --ga   c      au       cucg  uga 
5'     ugg uggaau  cgguauu    gc   a
       ||| ||||||  |||||||    ||    
3'     acc accuua  gccauaa    cg   a
   aaca   a      -c       auca  uac 

Deep sequencing

497 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 431492-431554 [+]
• Overlapping transcripts:

  sense

  C24H12.3 ; C24H12.3; intron 4

Clustered miRNAs

< 10kb from cel-mir-5593-1

• cel-mir-5593-1: chrII: 431492-431554 [+]
• cel-mir-5593-2: chrII: 438399-438461 [+]

Database links

• RNAcentral:URS000049A6CC_6239
• miRBase Tracker:MI0019155

Mature sequence cel-miR-5593-5p

• Accession: MIMAT0022307
• Sequence: 1 - gauggcuggaauaucgguauuc - 22
• Deep sequencing: 920 reads, 12 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00002E1E3A_6239

Mature sequence cel-miR-5593-3p

• Accession: MIMAT0022308
• Sequence: 43 - auaccgcauuccaaccaacaa - 63
• Deep sequencing: 70 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00005201A6_6239

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).