Stem-loop sequence cel-mir-5592-2

AccessionMI0019154 (change log)
DescriptionCaenorhabditis elegans miR-5592-2 stem-loop
Gene family MIPF0001366; mir-5592
Stem-loop
   --                       gug a  g 
5'   cggcccuuaccguuuaauacaug   c uc a
     |||||||||||||||||||||||   | ||  
3'   gccgggaauggcaaauuauguac   g gg c
   cg                       -aa -  c 
Get sequence
Deep sequencing
22476 reads, 31.2 reads per million, 16 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (WBcel235; GCA_000002985.3) Overlapping transcripts
chrX: 13759247-13759310 [+]
sense
F55F3.1.1 ; F55F3.1.1; intron 4
antisense
F55F3.10b ; F55F3.10b; exon 1
Clustered miRNAs
< 10kb from cel-mir-5592-2
cel-mir-5592-1chrX: 13759245-13759308 [-]
cel-mir-5592-2chrX: 13759247-13759310 [+]
Database links

Mature sequence cel-miR-5592-5p

Accession MIMAT0022305
Sequence

1 - 

cggcccuuaccguuuaauacaug

 - 23

Get sequence
Deep sequencing6218 reads, 14 experiments
Evidence not experimental
Database links

Mature sequence cel-miR-5592-3p

Accession MIMAT0022306
Sequence

42 - 

uguauuaaacgguaagggccggc

 - 64

Get sequence
Deep sequencing38663 reads, 16 experiments
Evidence not experimental
Database links

References

1
PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).