Stem-loop sequence cel-mir-5592-1

Accession

MI0019153 (change log)

Description

Caenorhabditis elegans miR-5592-1 stem-loop

Gene family

MIPF0001366; mir-5592

Stem-loop

   --                       uucc  g 
5'   cggcccuuaccguuuaauacaug    cg u
     |||||||||||||||||||||||    || c
3'   gccgggaauggcaaauuauguac    gu g
   cg                       -cac  a 

Deep sequencing

26074 reads, 159 reads per million, 17 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrX: 13759245-13759308 [-]
• Overlapping transcripts:

  antisense

  F55F3.11b ; F55F3.11b; exon 1

  F55F3.1.1 ; F55F3.1.1; intron 4

Clustered miRNAs

< 10kb from cel-mir-5592-1

• cel-mir-5592-2: chrX: 13759247-13759310 [+]
• cel-mir-5592-1: chrX: 13759245-13759308 [-]

Database links

• RNAcentral:URS0000009FDD_6239
• miRBase Tracker:MI0019153

Mature sequence cel-miR-5592-5p

• Accession: MIMAT0022305
• Sequence: 1 - cggcccuuaccguuuaauacaug - 23
• Deep sequencing: 6218 reads, 14 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00001DF49B_6239

Mature sequence cel-miR-5592-3p

• Accession: MIMAT0022306
• Sequence: 42 - uguauuaaacgguaagggccggc - 64
• Deep sequencing: 38663 reads, 16 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00004A51B7_6239

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).