Stem-loop sequence hsa-mir-5588

Accession

MI0019147

Description

Homo sapiens miR-5588 stem-loop

Stem-loop

a                    uuuuuuuuu 
 cuggcauuagugggacuuuu         u
 ||||||||||||||||||||         u
 gaccguaaucacccugaaaa         u
c                    uuguaauuu 

Deep sequencing

20 reads, 10 experiments

Genome context

• Coordinates (GRCh37.p5): chr3: 184970998-184971060 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000345326 ; EHHADH-001; intron 1

  OTTHUMT00000345327 ; EHHADH-002; intron 1

  OTTHUMT00000345329 ; EHHADH-004; intron 1

  OTTHUMT00000345330 ; EHHADH-005; intron 1

  OTTHUMT00000345326 ; EHHADH-001; intron 1

  OTTHUMT00000345327 ; EHHADH-002; intron 1

  OTTHUMT00000345329 ; EHHADH-004; intron 1

  OTTHUMT00000345330 ; EHHADH-005; intron 1

  OTTHUMT00000345326 ; EHHADH-001; intron 1

  OTTHUMT00000345327 ; EHHADH-002; intron 1

  OTTHUMT00000345329 ; EHHADH-004; intron 1

  OTTHUMT00000345330 ; EHHADH-005; intron 1

  OTTHUMT00000345328 ; EHHADH-003; intron 2

  OTTHUMT00000345328 ; EHHADH-003; intron 2

  OTTHUMT00000345328 ; EHHADH-003; intron 2

  ENST00000231887 ; EHHADH-001; intron 1

  ENST00000456310 ; EHHADH-002; intron 1

  ENST00000475987 ; EHHADH-004; intron 1

  ENST00000440662 ; EHHADH-005; intron 1

  ENST00000537544 ; EHHADH-201; intron 1

  ENST00000231887 ; EHHADH-001; intron 1

  ENST00000456310 ; EHHADH-002; intron 1

  ENST00000475987 ; EHHADH-004; intron 1

  ENST00000440662 ; EHHADH-005; intron 1

  ENST00000537544 ; EHHADH-201; intron 1

  ENST00000231887 ; EHHADH-001; intron 1

  ENST00000456310 ; EHHADH-002; intron 1

  ENST00000475987 ; EHHADH-004; intron 1

  ENST00000440662 ; EHHADH-005; intron 1

  ENST00000465178 ; EHHADH-003; intron 2

  ENST00000465178 ; EHHADH-003; intron 2

  ENST00000465178 ; EHHADH-003; intron 2

Mature sequence hsa-miR-5588-5p

• Accession: MIMAT0022295
• Sequence: 1 - acuggcauuagugggacuuuu - 21
• Deep sequencing: 11 reads, 5 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5588-5p
  • MIRDB:hsa-miR-5588-5p
  • TARGETMINER:hsa-miR-5588-5p

Mature sequence hsa-miR-5588-3p

• Accession: MIMAT0022296
• Sequence: 45 - aagucccacuaaugccagc - 63
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5588-3p
  • MIRDB:hsa-miR-5588-3p
  • TARGETMINER:hsa-miR-5588-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).