Stem-loop sequence hsa-mir-5587

Accession

MI0019144

Description

Homo sapiens miR-5587 stem-loop

Stem-loop

-        -  --     a      c 
 auggucac cu  ccggg cucagc c
 |||||||| ||  ||||| |||||| u
 uacuagug ga  ggccc gagucg g
c        u  cg     c      u 

Genome context

• Coordinates (GRCh37.p5): chr16: 585316-585368 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000239271 ; SOLH-001; intron 2

  OTTHUMT00000420513 ; SOLH-005; intron 2

  OTTHUMT00000420514 ; SOLH-003; intron 2

  OTTHUMT00000420515 ; SOLH-006; intron 2

  OTTHUMT00000239271 ; SOLH-001; intron 2

  OTTHUMT00000420513 ; SOLH-005; intron 2

  OTTHUMT00000420514 ; SOLH-003; intron 2

  OTTHUMT00000420515 ; SOLH-006; intron 2

  OTTHUMT00000239271 ; SOLH-001; intron 2

  ENST00000219611 ; SOLH-001; intron 2

  ENST00000562370 ; SOLH-005; intron 2

  ENST00000567216 ; SOLH-003; intron 2

  ENST00000568988 ; SOLH-006; intron 2

  ENST00000219611 ; SOLH-001; intron 2

  ENST00000562370 ; SOLH-005; intron 2

  ENST00000567216 ; SOLH-003; intron 2

  ENST00000568988 ; SOLH-006; intron 2

  ENST00000219611 ; SOLH-001; intron 2

Clustered miRNAs

< 10kb from hsa-mir-5587

• hsa-mir-5587: chr16: 585316-585368 [+]
• hsa-mir-3176: chr16: 593277-593366 [+]

Mature sequence hsa-miR-5587-5p

• Accession: MIMAT0022289
• Sequence: 1 - auggucaccuccgggacu - 18
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5587-5p
  • MIRDB:hsa-miR-5587-5p
  • TARGETMINER:hsa-miR-5587-5p

Mature sequence hsa-miR-5587-3p

• Accession: MIMAT0022290
• Sequence: 33 - gccccgggcagugugaucauc - 53
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-5587-3p
  • MIRDB:hsa-miR-5587-3p
  • TARGETMINER:hsa-miR-5587-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).