Stem-loop sequence hsa-mir-5582

Accession

MI0019138 (change log)

Symbol

HGNC:MIR5582

Description

Homo sapiens miR-5582 stem-loop

Stem-loop

   --                 a     acauc   u 
5'   uaggcacacuuaaaguu uagcu     agu a
     ||||||||||||||||| |||||     |||  
3'   auccgugugaauuucaa auuga     uca u
   gg                 a     cuaua   a 

Deep sequencing

313 reads, 0 reads per million, 46 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 46753125-46753192 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000317706 ; F2-001; intron 12

  OTTHUMT00000390677 ; F2-005; intron 12

  ENST00000311907 ; F2-001; intron 12

  ENST00000530231 ; F2-005; intron 12

Database links

• HGNC:MIR5582
• miRBase Tracker:MI0019138

Mature sequence hsa-miR-5582-5p

• Accession: MIMAT0022279
• Sequence: 1 - uaggcacacuuaaaguuauagc - 22
• Deep sequencing: 15 reads, 4 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-5582-5p
  • TargetScanVert:hsa-miR-5582-5p
  • miRDB:hsa-miR-5582-5p

Mature sequence hsa-miR-5582-3p

• Accession: MIMAT0022280
• Sequence: 47 - uaaaacuuuaagugugccuagg - 68
• Deep sequencing: 298 reads, 45 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetMiner:hsa-miR-5582-3p
  • TargetScanVert:hsa-miR-5582-3p
  • miRDB:hsa-miR-5582-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).