Stem-loop sequence hsa-mir-548as

Accession MI0019132
Description Homo sapiens miR-548as stem-loop
Gene family MIPF0000317; mir-548
Stem-loop 
--aaaa       c              c 
      guaauug ggguuuugccguug u
      ||||||| ||||||||||||||  
      uauuaac cccaaaaugguaau u
uguuug       a              u
Get sequence
Deep sequencing
1 reads, 1 experiments
Genome context
Coordinates (GRCh37.p5) Overlapping transcripts
chr13: 93142416-93142473 [+]
sense
OTTHUMT00000045451 ; RP11-165N12.1-001; intron 1
OTTHUMT00000045451 ; RP11-165N12.1-001; intron 1
OTTHUMT00000045451 ; RP11-165N12.1-001; intron 1
OTTHUMT00000045454 ; GPC5-001; intron 7
OTTHUMT00000045454 ; GPC5-001; intron 7
OTTHUMT00000045454 ; GPC5-001; intron 7
ENST00000416664 ; GPC5-IT1-001; intron 1
ENST00000408546 ; AL159152.1-201; exon 1
ENST00000416664 ; GPC5-IT1-001; intron 1
ENST00000408546 ; AL159152.1-201; exon 1
ENST00000416664 ; GPC5-IT1-001; intron 1
ENST00000377067 ; GPC5-001; intron 7
ENST00000377067 ; GPC5-001; intron 7
ENST00000377067 ; GPC5-001; intron 7

Mature sequence hsa-miR-548as-5p

Accession MIMAT0022267
Sequence

1 -  

aaaaguaauugcggguuuugcc

 - 22

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence not experimental
Predicted targets

Mature sequence hsa-miR-548as-3p

Accession MIMAT0022268
Sequence

37 -  

uaaaacccacaauuauguuugu

 - 58

Get sequence
Evidence not experimental
Predicted targets

References

1
PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).