Stem-loop sequence hsa-mir-548ar

Accession

MI0019131

Description

Homo sapiens miR-548ar stem-loop

Gene family

MIPF0000317; mir-548

Stem-loop

--                  u  ug   a 
  aaaaguaauugcaguuuu gc  uug a
  |||||||||||||||||| ||  |||  
  uuuuuauugacgucaaaa ug  gau c
cg                  -  gu   g 

Deep sequencing

2 reads, 2 experiments

Genome context

• Coordinates (GRCh37.p5): chr13: 115009980-115010036 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000045960 ; CDC16-001; intron 8

  OTTHUMT00000045965 ; CDC16-006; intron 8

  OTTHUMT00000045966 ; CDC16-007; intron 8

  OTTHUMT00000045967 ; CDC16-008; intron 8

  OTTHUMT00000276737 ; CDC16-009; intron 8

  OTTHUMT00000045960 ; CDC16-001; intron 8

  OTTHUMT00000045965 ; CDC16-006; intron 8

  OTTHUMT00000045966 ; CDC16-007; intron 8

  OTTHUMT00000045967 ; CDC16-008; intron 8

  OTTHUMT00000276737 ; CDC16-009; intron 8

  OTTHUMT00000045960 ; CDC16-001; intron 8

  OTTHUMT00000045965 ; CDC16-006; intron 8

  OTTHUMT00000045966 ; CDC16-007; intron 8

  OTTHUMT00000045967 ; CDC16-008; intron 8

  OTTHUMT00000276737 ; CDC16-009; intron 8

  ENST00000356221 ; CDC16-009; intron 8

  ENST00000375310 ; CDC16-007; intron 8

  ENST00000252457 ; CDC16-006; intron 8

  ENST00000375308 ; CDC16-008; intron 8

  ENST00000252458 ; CDC16-001; intron 8

  ENST00000360383 ; CDC16-201; intron 8

  ENST00000375312 ; CDC16-202; intron 8

  ENST00000356221 ; CDC16-009; intron 8

  ENST00000375310 ; CDC16-007; intron 8

  ENST00000252457 ; CDC16-006; intron 8

  ENST00000375308 ; CDC16-008; intron 8

  ENST00000252458 ; CDC16-001; intron 8

  ENST00000360383 ; CDC16-201; intron 8

  ENST00000375312 ; CDC16-202; intron 8

  ENST00000356221 ; CDC16-009; intron 8

  ENST00000375310 ; CDC16-007; intron 8

  ENST00000252457 ; CDC16-006; intron 8

  ENST00000375308 ; CDC16-008; intron 8

  ENST00000252458 ; CDC16-001; intron 8

  ENST00000360383 ; CDC16-201; intron 8

  ENST00000375312 ; CDC16-202; intron 8

Mature sequence hsa-miR-548ar-5p

• Accession: MIMAT0022265
• Sequence: 1 - aaaaguaauugcaguuuuugc - 21
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548ar-5p
  • MIRDB:hsa-miR-548ar-5p
  • TARGETMINER:hsa-miR-548ar-5p

Mature sequence hsa-miR-548ar-3p

• Accession: MIMAT0022266
• Sequence: 37 - uaaaacugcaguuauuuuugc - 57
• Deep sequencing: 2 reads, 2 experiments
• Evidence: not experimental
• Predicted targets:
  • DIANA-MICROT:hsa-miR-548ar-3p
  • MIRDB:hsa-miR-548ar-3p
  • TARGETMINER:hsa-miR-548ar-3p

References

1. PMID:21911355 "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades" Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N Nucleic Acids Res. 40:37-52(2012).