Stem-loop sequence mtr-MIR168c

Accession

MI0019093 (change log)

Description

Medicago truncatula miR168c stem-loop

Gene family

MIPF0000081; MIR168

Literature search

5 open access papers mention mtr-MIR168c
(20 sentences)

Stem-loop

   ----c    uu         ua     c          u     a   cua  u      u      
5'      ucac  cgcggucuc  auucg uuggugcagg cggga cca   ca ccgcug uuucg 
        ||||  |||||||||  ||||| |||||||||| ||||| |||   || |||||| |||| u
3'      agug  gcgccggag  uaagu aacuacguuc gcccu ggu   gu ggcggc aaaga 
   aucua    --         gc     c          c     a   uaa  -      c      

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 10278669-10278794 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR168c

• mtr-MIR2670c: chr5: 10276042-10276263 [+]
• mtr-MIR168c: chr5: 10278669-10278794 [+]

Database links

• miRBase Tracker:MI0019093

Mature sequence mtr-miR168c-5p

• Accession: MIMAT0022235
• Previous IDs: mtr-miR168c
• Sequence: 21 - ucgcuuggugcaggucgggaa - 41
• Evidence: experimental; Illumina [1-2]

Mature sequence mtr-miR168c-3p

• Accession: MIMAT0022236
• Previous IDs: mtr-miR168c*
• Sequence: 86 - cccgccuugcaucaacugaau - 106
• Evidence: experimental; Illumina [1]

References

1. PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).
2. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).