Stem-loop sequence mtr-MIR2619b

Accession

MI0019077 (change log)

Description

Medicago truncatula miR2619b stem-loop

Gene family

MIPF0001294; MIR2619

Literature search

1 open access papers mention mtr-MIR2619b
(1 sentences)

Stem-loop

   aaa       a     u                    gc      aggcaaaauaaaaauaaaaaauuugacacauggcaccuc 
5'    cagcccc uaugu uugauucuuuggcaguuuug  ccccca                                       a
      ||||||| ||||| ||||||||||||||||||||  ||||||                                       c
3'    gucgggg auaca aacuaagaaaccgucaaaac  gggggu                                       u
   uua       g     u                    uu      caagucacaacugagccaguugcgacugcaccgugggau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 7493105-7493275 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019077

Mature sequence mtr-miR2619b-5p

• Accession: MIMAT0022203
• Previous IDs: mtr-miR2619b
• Sequence: 11 - auauguuuugauucuuuggca - 31
• Evidence: experimental; Illumina [1]

Mature sequence mtr-miR2619b-3p

• Accession: MIMAT0022204
• Previous IDs: mtr-miR2619b*
• Sequence: 143 - ccaaagaaucaauacauaggg - 163
• Evidence: experimental; Illumina [1]

References

1. PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).