Stem-loop sequence mtr-MIR5554a

AccessionMI0019075 (change log)
DescriptionMedicago truncatula miR5554a stem-loop
Gene family MIPF0000815; MIR2592
Literature search

1 open access papers mention mtr-MIR5554a
(1 sentences)

Stem-loop 
   -      g     u      ug   a             g      -    c 
5'  cagcau cgaug gcaucu  aac augguauucaagu ucaaga aaug a
    |||||| ||||| ||||||  ||| ||||||||||||| |||||| |||| c
3'  guugua gcuac cguaga  uug uaccauaaguuca aguuuu uuac c
   g      g     u      cg   c             a      c    u
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (JCVI_Mt3.5.2) Overlapping transcripts
chr1: 32660180-32660284 [-]
intergenic
Database links

Mature sequence mtr-miR5554a-5p

Accession MIMAT0022199
Previous IDsmtr-miR5554a
Sequence

11 -  

ugugcaucuugaacaaugguau

 - 32

Get sequence
Evidence experimental; Illumina [1]

Mature sequence mtr-miR5554a-3p

Accession MIMAT0022200
Previous IDsmtr-miR5554a*
Sequence

75 -  

accaucguugcagaugcucauc

 - 96

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:21762498 "Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing" Wang T, Chen L, Zhao M, Tian Q, Zhang WH BMC Genomics. 12:367(2011).