Stem-loop sequence cel-mir-5552

Accession

MI0019073 (change log)

Description

Caenorhabditis elegans miR-5552 stem-loop

Stem-loop

   --------------         a u    u   a           a       aauac a 
5'               ggucugcua u auuu ugu guuuguagucu gcagacc     c a
                 ||||||||| | |||| ||| ||||||||||| |||||||     |  
3'               ccagacgau a uaaa aca caaacaucaga cgucugg     g a
   uuuuuuuuuuuuuc         c c    c   c           c       guuuc a 

Deep sequencing

1079 reads, 0 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrV: 18036732-18036841 [+]
• Overlapping transcripts:

  sense

  Y59A8B.6 ; Y59A8B.6; intron 9

Database links

• RNAcentral:URS0000047399_6239
• miRBase Tracker:MI0019073

Mature sequence cel-miR-5552-5p

• Accession: MIMAT0022195
• Sequence: 18 - uguaguuuguagucuagcagacc - 40
• Deep sequencing: 341 reads, 14 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005DC230_6239

Mature sequence cel-miR-5552-3p

• Accession: MIMAT0022196
• Sequence: 59 - ucugccagacuacaaaccacaca - 81
• Deep sequencing: 735 reads, 11 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000005065B_6239

References

1. PMID:21810936 "Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans" Kato M, Chen X, Inukai S, Zhao H, Slack FJ RNA. 17:1804-1820(2011).