Stem-loop sequence cel-mir-5550

Accession

MI0019071 (change log)

Description

Caenorhabditis elegans miR-5550 stem-loop

Stem-loop

   ---u        a c      a ac        a                aaau  g 
5'     gacacucc c guuucu a  cccgccca gauuucauuugcacug    gu u
       |||||||| | |||||| |  |||||||| ||||||||||||||||    ||  
3'     cugugagg g caaaga u  gggcgggu cuaaaguaaacgugac    cg c
   guug        c a      c cu        g                --gc  g 

Deep sequencing

697 reads, 0 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIV: 409762-409872 [+]
• Overlapping transcripts:

  antisense

  T07A9.3 ; T07A9.3; intron 1

Database links

• RNAcentral:URS00005B22F0_6239
• miRBase Tracker:MI0019071

Mature sequence cel-miR-5550-5p

• Accession: MIMAT0022191
• Sequence: 22 - ccccgcccaagauuucauuugc - 43
• Deep sequencing: 5 reads, 5 experiments
• Evidence: experimental; Illumina [1]

Mature sequence cel-miR-5550-3p

• Accession: MIMAT0022192
• Sequence: 67 - caaaugaaaucgugggcggg - 86
• Deep sequencing: 686 reads, 14 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00007894B3_6239

References

1. PMID:21810936 "Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans" Kato M, Chen X, Inukai S, Zhao H, Slack FJ RNA. 17:1804-1820(2011).