Stem-loop sequence cel-mir-5547

Accession

MI0019068 (change log)

Description

Caenorhabditis elegans miR-5547 stem-loop

Stem-loop

   cugcggaau                        a  a            aaaug 
5'          uuuguugauugagacaacuuuuag cc auaggcauccaa     a
            |||||||||||||||||||||||| || ||||||||||||      
3'          aagcaacuaacucuguugaaaauc gg uauccguagguu     u
   aaauagagu                        c  c            aaaac 

Deep sequencing

136 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 12238602-12238711 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00006136D3_6239
• miRBase Tracker:MI0019068

Mature sequence cel-miR-5547-5p

• Accession: MIMAT0022185
• Sequence: 24 - caacuuuuagaccaauaggcau - 45
• Deep sequencing: 97 reads, 12 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00004CE860_6239

Mature sequence cel-miR-5547-3p

• Accession: MIMAT0022186
• Sequence: 68 - gccuaucggccuaaaaguuguc - 89
• Deep sequencing: 31 reads, 7 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:21810936 "Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans" Kato M, Chen X, Inukai S, Zhao H, Slack FJ RNA. 17:1804-1820(2011).