Stem-loop sequence cel-mir-5546

Accession MI0019067
Description Caenorhabditis elegans miR-5546 stem-loop
Stem-loop 
---a  uaaauaau   a            uuu   -       uu        aaac 
    gc        ugc uuuucgcaaccc   cgc caauuuu  ucgugaaa    g
    ||        ||| ||||||||||||   ||| |||||||  ||||||||     
    cg        acg aaaagcguuggg   gcg guuaaaa  agcauuuu    u
ggca  --ccaauu   c            uac   c       --        aaug
Get sequence
Deep sequencing
7 reads, 2 experiments
Genome context
Coordinates (WBcel215) Overlapping transcripts
I: 2888450-2888559 [-]
sense
Y71F9AL.16 ; Y71F9AL.16; intron 4
Y71F9AL.16 ; Y71F9AL.16; intron 4
Y71F9AL.16 ; Y71F9AL.16; intron 4
antisense
Y71F9AL.7 ; Y71F9AL.7; intron 1
Y71F9AL.7 ; Y71F9AL.7; intron 1
Y71F9AL.7 ; Y71F9AL.7; intron 1

Mature sequence cel-miR-5546-5p

Accession MIMAT0022183
Sequence

24 -  

acccuuucgccaauuuuuuucgu

 - 46

Get sequence
Evidence experimental; Solexa [1]
Predicted targets

Mature sequence cel-miR-5546-3p

Accession MIMAT0022184
Sequence

67 -  

gaaaaauugcgcgcauggguug

 - 88

Get sequence
Deep sequencing 7 reads, 2 experiments
Evidence experimental; Solexa [1]
Predicted targets

References

1
PMID:21810936 "Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans" Kato M, Chen X, Inukai S, Zhao H, Slack FJ RNA. 17:1804-1820(2011).