Stem-loop sequence osa-MIR5512a

Accession

MI0019030 (change log)

Previous IDs

osa-MIR5512

Description

Oryza sativa miR5512 stem-loop

Gene family

MIPF0001478; MIR5512

Literature search

1 open access papers mention osa-MIR5512a
(2 sentences)

Stem-loop

   c  u          uu                                  auauacuagaguauguucu 
5'  uc uguauuuuuu  uagcauuaccauauccuauuuggcaaugaauuuc                   u
    || ||||||||||  ||||||||||||||||||||||||||||||||||                    
3'  ag acauaaaaaa  aucguaaugguauaggauaaaccguuacuuaaag                   a
   -  u          --                                  ugaaaucuguuagguuaga 

Deep sequencing

39 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 18386976-18387112 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR5512a

• osa-MIR5512a: Chr4: 18386976-18387112 [+]
• osa-MIR5512b: Chr4: 18386979-18387110 [-]

Database links

• miRBase Tracker:MI0019030

Mature sequence osa-miR5512a

• Accession: MIMAT0022145
• Previous IDs: osa-miR5512
• Sequence: 107 - uaggauaugguaaugcuaaaa - 127
• Deep sequencing: 33 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005E00A8_39947

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).