Stem-loop sequence osa-MIR5497

Accession

MI0019015 (change log)

Description

Oryza sativa miR5497 stem-loop

Literature search

3 open access papers mention osa-MIR5497
(6 sentences)

Stem-loop

   aauug       ---      c     c   ca  auaacaugugcacaguauagcucggacuuguuaau 
5'      uugccca   gaauau uggga gag  ug                                   c
        |||||||   |||||| ||||| |||  ||                                    
3'      gaugggu   uuugua aucuu cuc  ac                                   u
   cgaua       ucu      u     -   ac  acucuuaccuuccguaacccucucgguuguaaucc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr3: 32506012-32506149 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019015

Mature sequence osa-miR5497

• Accession: MIMAT0022130
• Sequence: 11 - cagaauaucugggacgagcau - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).