Stem-loop sequence osa-MIR5490

Accession

MI0019008 (change log)

Description

Oryza sativa miR5490 stem-loop

Literature search

1 open access papers mention osa-MIR5490
(2 sentences)

Stem-loop

   g       --a         -    cc   u  ag    -        --g   a 
5'  cuacucc   uguccuaaa gaaa  uca uc  aagg uguaccug   aug c
    |||||||   ||||||||| ||||  ||| ||  |||| ||||||||   ||| a
3'  gaugagg   gcaggauuu uuuu  ggu ag  uucc acauggac   uau u
   g       gag         a    ua   u  aa    u        aua   g 

Deep sequencing

87 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr11: 25091558-25091664 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0019008

Mature sequence osa-miR5490

• Accession: MIMAT0022123
• Sequence: 77 - uuggauuuuuauuuaggacgg - 97
• Deep sequencing: 19 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000034E269_39947

References

1. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).